PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P14600_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 240aa    MW: 25988.5 Da    PI: 7.6237
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P14600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.11.8e-302104198
                 DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                            +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +++l++a p++ r+++ +sl+yeA+ r+ dPvyG+vg+++++
  GSMUA_Achr2P14600_001   2 SCNGCRVLRKGCSDGCTIRPCLqwirsPEAQANATVFLAKFYGRAGLINLINAGPPHLRPAIYRSLLYEACGRIIDPVYGSVGLLWSG 89 
                            6*************************************************************************************** PP

                 DUF260  84 qqqleqlkaelallk 98 
                            +++++q+++e +ll+
  GSMUA_Achr2P14600_001  90 SWRVCQAAVESVLLR 104
                            ********9998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.6341107IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-252102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDGCTIR PCLQWIRSPE AQANATVFLA KFYGRAGLIN LINAGPPHLR  60
PAIYRSLLYE ACGRIIDPVY GSVGLLWSGS WRVCQAAVES VLLRGEPATR FPADATDPKP  120
HDIRCMTRIP SDIGAGANCD LHKATANSRV RFKRSANALR PPSSPSSDPF AEGMHQTEAE  180
GKLPEETVQE DDADELDLTL GFEPAARGAA GGRGPVIRQN GEGTAWFSEG CPEDLRLRLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388795.11e-177PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9M8862e-67LBD41_ARATH; LOB domain-containing protein 41
TrEMBLM0S8011e-177M0S801_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P14600_0011e-177(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-67LOB domain-containing protein 41